Additional Campus Affiliations
Adjunct Professor, Computer Science
Recent Publications
Dubinkina, V., Bhogale, S., Hsieh, P. H., Dibaeinia, P., Nambiar, A., Maslov, S., Yoshikuni, Y., & Sinha, S. (2024). A transcriptomic atlas of acute stress response to low pH in multiple Issatchenkia orientalis strains. Microbiology Spectrum, 12(1). https://doi.org/10.1128/spectrum.02536-23
Hao, Q., Liu, M., Daulatabad, S. V., Gaffari, S., Song, Y. J., Srivastava, R., Bhaskar, S., Moitra, A., Mangan, H., Tseng, E., Gilmore, R. B., Frier, S. M., Chen, X., Wang, C., Huang, S., Chamberlain, S., Jin, H., Korlach, J., McStay, B., ... Prasanth, K. V. (2024). Monoallelically expressed noncoding RNAs form nucleolar territories on NOR-containing chromosomes and regulate rRNA expression. eLife, 13, Article e80684. https://doi.org/10.7554/eLife.80684
Ghaffari, S., Bouchonville, K. J., Saleh, E., Schmidt, R. E., Offer, S. M., & Sinha, S. (2023). BEDwARS: a robust Bayesian approach to bulk gene expression deconvolution with noisy reference signatures. Genome biology, 24(1), Article 178. https://doi.org/10.1186/s13059-023-03007-7
Louie, A. Y., Kim, J. S., Drnevich, J., Dibaeinia, P., Koito, H., Sinha, S., McKim, D. B., Soto-Diaz, K., Nowak, R. A., Das, A., & Steelman, A. J. (2023). Influenza A virus infection disrupts oligodendrocyte homeostasis and alters the myelin lipidome in the adult mouse. Journal of neuroinflammation, 20(1), Article 190. https://doi.org/10.1186/s12974-023-02862-2
Tabe-Bordbar, S., & Sinha, S. (2023). Integrative modeling of lncRNA-chromatin interaction maps reveals diverse mechanisms of nuclear retention. BMC genomics, 24(1), Article 395. https://doi.org/10.1186/s12864-023-09498-9